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URN: urn:nbn:de:kobv:517-opus-45075
URL: http://opus.kobv.de/ubp/volltexte/2010/4507/
Riano-Pachon, Diego Mauricio ;
Nagel, Axel ;
Neigenfind, Jost ;
Wagner, Robert ;
Basekow, Rico ;
Weber, Elke ;
Müller-Röber, Bernd ;
Diehl, Svenja ;
Kersten, Birgit
GabiPD : the GABI primary database - a plant integrative "omics" database
pdf-Format:
Dokument 1.pdf (4.333 KB) (SHA-1:28e036de25eaee7be6f89b80597257821645d314)
Kurzfassung in Englisch
The GABI Primary Database, GabiPD (http:// www.gabipd.org/), was established in the frame of the German initiative for Genome Analysis of the Plant Biological System (GABI). The goal of GabiPD is to collect, integrate, analyze and visualize primary information from GABI projects. GabiPD constitutes a repository and analysis platform for a wide array of heterogeneous data from high-throughput experiments in several plant species. Data from different ‘omics’ fronts are incorporated (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from 14 different model or crop species. We have developed the concept of GreenCards for textbased retrieval of all data types in GabiPD (e.g. clones, genes, mutant lines). All data types point to a central Gene GreenCard, where gene information is integrated from genome projects or NCBI UniGene sets. The centralized Gene GreenCard allows visualizing ESTs aligned to annotated transcripts as well as displaying identified protein domains and gene structure. Moreover, GabiPD makes available interactive genetic maps from potato and barley, and protein 2DE gels from Arabidopsis thaliana and Brassica napus. Gene expression and metabolic-profiling data can be visualized through MapManWeb. By the integration of complex data in a framework of existing knowledge, GabiPD provides new insights and allows for new interpretations of the data.
Freie Schlagwörter (Englisch):
Phosphorylation sites , Arabidopsis thaliana , Information , Proteins , Families
Institut:
Institut für Biochemie und Biologie
DDC-Sachgruppe:
Biowissenschaften, Biologie
Dokumentart:
c Postprint
Schriftenreihe:
Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe, ISSN 1866-8372
Bandnummer:
paper 137
Quelle:
Nucleic acids research 37 (2009), Database issue, S. D954 - D959, DOI: 10.1093/nar/gkn611
Sprache:
Englisch
Erstellungsjahr:
2009
Publikationsdatum:
19.07.2010
Bemerkung:
The article was originally published by Oxford University Press:
Nucleic Acids Research. - 37 (2009), Database issue, S. D954-D959
ISSN 0305-1048
DOI 10.1093/nar/gkn611
Lizenz:
Dieses Werk ist unter einer
Creative Commons-Lizenz lizenziert.
Creative Commons - Namensnennung, Nicht kommerziell, Weitergabe zu gleichen Bedingungen 2.0 Deutschland
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